Frits Zernike
Location
CFIM image analysis room
| QuPath (0.4.1) |
Visualization and analysis of tissue slides in brightfield or fluorescence. |
| Zen Blue (3.7)* |
Visualization and analysis of images recorded on Zeiss Microsopes. |
| Fiji | Image processing package - Free |
| Stardist (Napari) |
3D segmentation of nuclei within Napari viewer. |
| Cellpose 2.0 |
Segmentation of nuclei and cells based on membrane or cytoplasmic signal |
| Sigma Plot |
Statistical analysis and plot of quantified data. |
| CellProfiler |
Identification and quantification of cell phenotypes |
Available softwares
* These software requires to connect to a license file.
Technical specifications
| PC | HP Z620 |
| Processor | Intel(R) Xeon(R) CPU E5-2670 0 2.6GHz - 32CPUs |
| Display | interactive pen display monitor |
| RAM | 96 GB |
| Graphics card | NVIDIA GeForce RTX 2080Ti |
Frits Zernike (1888-1966) invented phase contrast, allowing to see cells without staining them. He received a Nobel prize in 1953.