Publications – University of Copenhagen

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CFIM > Publications


On this page, you can find a number of publications where CFIM equipment has been used. Please note that this is not a complete list of publications where CFIM microscopes have been used to process or produce images.

2016 2015 2014 2013 2012 2011 2010


If you are publishing an article with results obtained with CFIM microscopes, please make sure to acknowledge CFIM: "We acknowledge the Core Facility for Integrated Microscopy, Faculty of Health and Medical Sciences, University of Copenhagen".

In addition, we would be grateful to receive a pdf version of the paper in which CFIM has been acknowledged. Thereby, your paper will also be published in the list below.


Corcelle-Termeau et. al. in Autophagy
Excess sphingomyelin disturbs ATG9A trafficking and autophagosome closure
doi: 10.1080/15548627.2016.1159378

Jakobsen et. al. in Scand. J. Med. Sci. Sports
Composition and adaptation of human myotendinous junction and neighboring muscle fibers to heavy resistance training
doi: 10.1111/sms.12794

Jensen et. al. in Scientific Reports
CLARITY-compatible lipophilic dyes for electrode marking and neuronal tracing
doi: 10.1038/srep32674

Plantard et. al., in Imaging and Microscopy
Microscopy at the Core

Rosselló et. al. in Heliyon
Gamma-tubulin coordinates nuclear envelope assembly around chromatin
doi: 10.1016/j.heliyon.2016.e00166

Qvortrup K. in Microscopy and analysis
Structure of the glomerular filtration barrier in kidney


Altmeyer et al. in Nature Communications
Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose)
doi: 10.1038/ncomms9088

Andersen et al. in American Journal of Physiology - Cell Physiology
Protein kinase A stimulates Kv7.1 surface expression by regulating Nedd4-2-dependent endocytic trafficking
doi: 10.1152/ajpcell.00383.2014

Andersen et. al. in Channels
PKC and AMPK regulation of Kv1.5 potassium channels
doi: 10.1080/19336950.2015.1036205

Apuschkin et al. in European Journal of Neuroscience
A novel dopamine transporter transgenic mouse line for identification and purification of midbrain dopaminergic neurons reveals midbrain heterogeneity.
doi: 10.1111/ejn.13046
with Journal Cover

Azmi et al. in Langmuir
Modulatory Effect of Human Plasma on the Internal Nanostructure and Size Characteristics of Liquid-Crystalline Nanocarriers
doi: 10.1021/acs.langmuir.5b00830

Bæk et al. in Antimicrobial Agent and Chemotherapy
Stepwise Decrease in Daptomycin Susceptibility in Clinical Staphylococcus aureus Isolates Associated with an Initial Mutation in rpoB and a Compensatory Inactivation of the clpX Gene
doi: 10.1128/AAC.01303-15.

Dahl et al. in Acta Physiologica
Three-dimensional reconstruction of the human skeletal muscla mitochondrial network as a tool to assess mitochondrila content and structural organization
doi: 10.1111/apha.12289

David et al. in Scientific reports
Auxiliary KCNE subunits modulate both homotetrameric Kv2.1 and heterotetrameric Kv2.1/Kv6.4 channels
doi: 10.1038/srep12813

Ejlerskov et. al. in Cell
Lack of Neuronal IFN-b-IFNAR Causes Lewy Bodyand Parkinson’s Disease-like Dementia
doi: 10.1016/j.cell.2015.08.069

Gam et. al. in Eur J Physiol
Effect of high-fat diet on rat myometrium during pregnancy - isolated myometrial mitochondria are not affected
doi: 10.1007/s00424-014-1599-7

Grubb et. al. in American Journal of Physiology - Heart and Circulatory Physiology
Preservation of cardiac function by prolonged action potentials in mice deficient of KChIP2
doi: 10.1152/ajpheart.00166.2015

Klingberg et al. in Toxicology Research
Uptake of gold nanoparticles in primary human endothelial cells
doi: 10.1039/C4TX00061G

Minocherhomji et. al. in Nature
Replication stress activates DNA repair synthesis in mitosis
doi: 10.1038/nature16139

Molsted et al. in Muscle & Nerve
Fiber type-specific response of skeletal muscle satellite cells to high-intensity resistance training in dialysis patients
doi: 10.1002/mus.24633

Shih et al. in Cell Reports
A Gene Regulatory Network Cooperatively Controlled by Pdx1 and Sox9 Governs Lineage Allocation of Foregut Progenitor Cells
doi: 10.1016/j.celrep.2015.08.082

Steffensen et. al. in Journal of Cardiovascular Electrophysiology
IKs Gain- and Loss-of-Function in Early-Onset Lone Atrial Fibrillation
doi: 10.1111/jce.12666

Subramani et. al. in mBio
Plasmodium falciparum-infected erythrocyte knob density is linked to the PfEMP1 variant expressed.
doi: 10.1128/mBio.01456-15

Vestergaard et al. in The Journal of Neuroscience
Divisive Gain Modulation of Motoneurons by Inhibition Optimizes Muscular Control
with Journal Cover
doi: 10.1523/JNEUROSCI.3899-14.2015


Akbari et al. in DNA Repair
Overexpression of DNA ligase III in mitochondria protects cells against oxidative stress and improves mitochondrial DNA base excision repair
doi: 10.1016/j.dnarep.2014.01.015

Carlsen et al. in Frontiers in Neural Circuits
Purines released from astrocytes inhibit excitatory synaptic transmission in the ventral horn of the spinal cord
doi: 10.3389/fncir.2014.00060

Danielsen et al. in PLOS Genetics
Transcriptional Control of Steroid Biosynthesis Genes in the Drosophila Prothoracic Gland by Ventral Veins Lacking and Knirps
doi: 10.1371/journal.pgen.1004343

Frankel et al. in Nature Communications
A non-conserved miRNA regulates lysosomal function and impacts on a human lysosomal storage disorder
DOI: 10.1038/ncomms6840

Guzulaitis et al. in The Journal of Neuroscience
Dense Distributed Processing in a Hindlimb Scratch Motor Network
doi: 10.1523/JNEUROSCI.1079-14.2014

Hempel et al. in The Journal of Cerebral Blood Flow & Metabolism
Endothelial glycocalyx on brain endothelial cells is lost in experimental cerebral malaria
doi: 10.1038/jcbfm.2014.79

Købler et al. in Analytical and Bioanalytical Chemistry
FIB-SEM imaging of carbon nanotubes in mouse lung tissue
doi: 10.1007/s00216-013-7566-x

Nielsen et al. in the Journal of Physiology
Subcellular distribution of glycogen and decreased tetanic Ca2+ in fatigued single intact mouse muscle fibres
doi: 10.1113/jphysiol.2014.271528

Nielsen et al. in Biomarkers in Medicine
Gain-of-function mutations in potassium channel subunit KCNE2 associated with early-onset lone atrial fibrillation
doi: 10.2217/bmm.13.137

Nilson et al. in Langmuir
PEGylation of Phytantriol-Based Lyotropic Liquid Crystalline Particles - The Effect of Lipid Composition, PEG Chain length, and Temperature on the Internal Nanostructure
doi: 10.1021/la501411w

Petersen et al. in The Journal of Neuroscience
Premotor Spinal Network with Balanced Excitation and Inhibition during Motor Patterns Has High Resilience to Structural Division 
with Journal Cover
doi: 10.1523/JNEUROSCI.3349-13.2014

Radhakrishman et al. in PNAS
Immature truncated O-glycophenotype of cancer directly induces oncogenic features
doi: 10.1073/pnas.1406619111

Wienecke et al. in The Journal of Neuroscience
Spinal Cord Injury Enables Aromatic L-Amino Acid Decarboxylase Cells to Synthesize Monoamines
doi: 10.1523/JNEUROSCI.3838-13.2014


Alsted et al. in the Journal of Physiology
Contraction-induced lipolysis is not impaired by inhibition of hormone-sensitive lipase in skeletal muscle.
doi: 10.1113/jphysiol.2013.260794

David et al. in Traffic
Trafficking of the IKs -Complex in MDCK Cells: Site of Subunit Assembly and Determinants of Polarized Localization
doi: 10.1111/tra.12042

Fürst et al. in PLoS One
The C-Type Lectin of the Aggrecan G3 Domain Activates Complement
doi: 10.1371/journal.pone.0061407

Guterbaum et al. in the Journal of Vascular Research
Endothelial Nitric Oxide Synthase Phosphorylation at Threonine 495 and Mitochondrial Reactive Oxygen Species Formation in Response to a High H2O2 Concentration
doi: 10.1159/000354225

Haase et al. in Diabetologia
Growth arrest specific protein (GAS) 6: a role in the regulation of proliferation and functional capacity of the perinatal rat beta cell
doi: 10.1007/s00125-012-2821-9   

Hoier et al. in FASEB
Subcellular localization and mechanism of secretion of vascular endothelial growth factor in human skeletal muscle.
doi: 10.1096/fj.12-224618

Hulstrøm et al. in the American Journal of Physiology - Cell Physiology
Adipocyte size and cellular expression of caveolar proteins analyzed by confocal microscopy
doi: 10.1152/ajpcell.00273.2012

Jeppesen et al. in Diabetes
LKB1 Regulates Lipid Oxidation During Exercise  Independently of AMPK
doi: 10.2337/db12-1160

Livigni et al. in Current Biology
A Conserved Oct4/POUV-Dependent Network Links Adhesion and Migration to Progenitor Maintenance
doi: 10.1016/j.cub.2013.09.048

Olsen et al. in Cardiovascular Diabetology
Myocardial impulse propagation is impaired in right ventricular tissue of Zucker Diabetic Fatty (ZDF) rats
doi: 10.1186/1475-2840-12-19

Prats et al. in PLoS One
An Optimized Histochemical Method to Assess Skeletal Muscle Glycogen and Lipid Stores Reveals Two Metabolically Distinct Populations of Type I Muscle Fibers
doi: 10.1371/journal.pone.0077774

Ren et al. in Neuroscience
The time course of serotonin 2c receptor expression after spinal transection of rats: an immunohistochemical study
doi: 10.1016/j.neuroscience.2012.12.063

Ringholm et al. in Experimental Gerontology
Effect of lifelong resveratrol supplementation and exercise training on skeletal muscle oxidative capacity in aging mice; impact of PGC-1α
doi: 10.1016/j.exger.2013.08.012

Sylow et al. in Diabetes
Rac1 Is a Novel Regulator of Contraction-Stimulated  Glucose Uptake in Skeletal Muscle
doi: 10.2337/db12-0491

Sylow et al. in Diabetes
Rac1 signaling is required for insulin-stimulated glucose uptake and is dysregulated in insulin resistant murine and human skeletal muscle
doi: 10.2337/db12-1148

Sylow et al. in Cell Signal
Akt and Rac1 signaling are jointly required for insulin-stimulated glucose uptake in skeletal muscle and downregulated in insulin resistance.
doi: 10.1016/j.cellsig.2013.11.007

Søgaard et al. in the Journal of Biological Chemistry
Functional Modulation of the Glutamate Transporter Variant GLT1b by the PDZ Domain Protein PICK1
doi: 10.1074/jbc.M113.471128

van der Post et al. in the Journal of Biological Chemistry
Site-specific O-glycosylation on the MUC2 mucin inhibits cleavage by the Porphyromonas gingivalis secreted cysteine protease (RgpB)doi: 10.1074/jbc.M113.459479

Wierzbicki et al. in PLoS One
Mapping the Complex Morphology of Cell Interactions with Nanowire Substrates Using FIB-SEM
doi: 10.1371/journal.pone.0053307


Alhede et al. in FEMS Immunology and Medical Microbiology
Combination of microscopic techniques reveals a comprehensive visual impression of biofilm structure and composition
doi: 10.1111/j.1574-695X.2012.00956.x

Andersen et al. in Traffic
AMP-Activated Protein Kinase Downregulates Kv7.1 Cell Surface Expression
doi: 10.1111/j.1600-0854.2011.01295.x

Behrendt et al. in Applied and Environmental Microbiology
Biofilm Growth and Near-Infrared Radiation-Driven Photosynthesis of the Chlorophyll d-Containing Cyanobacterium Acaryochloris marina

Brandt et al. in International Symposium on Biomedical Imaging: From Nano to Macro
On the Bayesian Reconstruction Method For Randomly Oriented Particles in Cryo-EM.

Brandt et al. in Proc. the 11th Asian Conference on Computer Vision
Bayesian Epipolar Geometry Estimation from  Tomographic Projections

Christophersen et al. in European Heart Journal

Genetic variation in KCNA5: impact on the atrial-specific potassium current IKur in patients with lone atrial fibrillation

Clemmensen et al. in Journal of Leukocyte Biology
Olfactomedin 4 defines a subset of human neutrophils

doi: 10.1189/jlb.0811417

Dahlgaard et al. in PNAS
Neurofibromatosis-like phenotype in Drosophila caused by lack of glucosylceramide extension
doi: 10.1073/pnas.1115453109

Hundahl et al. in PLoS One
Circadian Behaviour in Neuroglobin Deficient Mice
doi: 10.1371/journal.pone.0034462

Sørensen et al. in the American Journal of Renal Physiology
Role of connexin40 in the autoregulatory response of the afferent arteriole
doi: 10.1152/ajprenal.00026.2012

van Gennip et al. in Infection and Immunity 
Interactions between Polymorphonuclear Leukocytes and Pseudomonas aeruginosa  Biofilms on Silicone Implants In Vivo
doi: 10.1128/IAI.06215-11

Vesterdal et al. in Toxicology Letters
Carbon black nanoparticles and vascular dysfunction in cultured endothelial cells and artery segments
doi: 10.1016/j.toxlet.2012.07.022



Alhede et al. in PLoS One

Phenotypes of Non-Attached Pseudomonas aeruginosa Aggregates Resemble Surface Attached Biofilm
doi: 10.1371/journal.pone.0027943

Behrendt et al. in The ISME Journal
Endolithic chlorophyll d-containing phototrophs
doi: 10.1038/ismej.2010.195

Bui et al. in Environmental Biology
Survival of Campylobacter jejuni in co-culture with Acanthamoeba castellanii: role of amoeba-mediated depletion of dissolved oxygen
doi: 10.1111/j.1462-2920.2011.02655.x

Frankel et al. in EMBO Journal
microRNA-101 is a potent inhibitor of autophagy
doi: 10.1038/emboj.2011.331

Glenthøj et al. in Blood
Serglycin participates in retention of α-defensin in granules during myelopoiesis
doi: 10.1182/blood-2011-06-362947

Jürgensen et al. in the Journal of Biological Chemistry
A Novel Functional Role of Collagen Glycosylation
doi: 10.1074/jbc.M111.266692

Loeschner et al. in Particle and Fibre Toxicology
Distribution of silver in rats following 28 days of repeated oral exposure to silver nanoparticles or silver acetate
doi: 10.1186/1743-8977-8-18

Vestentoft et al. in BMC Developmental Biology
Three-dimensional reconstructions of intrahepatic bile duct tubulogenesis in human liver doi: 10.1186/1471-213X-11-56



Doessing et al. in the European Journal of Endocrinology
GH and IGF1 levels are positively associated with musculotendinous collagen expression: experiments in acromegalic and GH deficiency patients
doi: 10.1530/EJE-10-0818

Yen et al. in Plos One
A Comparative Study of Fat Storage Quantitation in Nematode Caenorhabditis elegans Using Label and Label-Free Methods
doi: 10.1371/journal.pone.0012810