Santiago Ramón Y Cajal
Location
CFIM image analysis room
| QuPath (0.4.2) | Visualization and analysis of brightfield and fluorescence tissue section |
| Zen Blue (3.7)* | Visualization and analysis of images recorded on Cell Observer (Spinning Disc and TIRF), Axioscan, Widefield and SteREOLumar |
| Amira (2019.2)* | 3D visualization and manipulation for EM and LM images |
| Fiji | Image processing package - Free |
| Cell Profiler | Automation of image quantification for biologists - Free |
| Huygens Pro* | Software for deconvolution and stitching of large images |
| Arivis 4D* | Visualization and analysis of large multidimensional fluorescent images |
| Imaris 10.0* | Visualization and analysis of large multidimensional fluorescent images |
| Matlab 2021b* | Analysis and mathematical software for large multidimensional images |
| Stardist (Napari) | 3D segmentation of nuclei within Napari viewer. |
| Cellpose 2.0 | Segmentation of nuclei and cells based on membrane or cytoplasmic signal |
Available softwares
* These software requires to connect to a license file.
Technical specifications
| PC | ASUS |
| Processors | AMD Ryzen Threadripper 3990X 64 Cores |
| RAM | 256 GB |
| Graphics card | NVIDIA GeForce RTX 3090 |
Santiago Ramon Y Cajal