Frits Zernike
Location
CFIM image analysis room
| QuPath (latest) |
Visualization and analysis of tissue slides in brightfield or fluorescence. |
| Zen Blue (3.9)* |
Visualization and analysis of images recorded on Zeiss Microsopes. |
| Fiji | Image processing package - Free |
| Stardist (Napari) |
3D segmentation of nuclei within Napari viewer. |
| Cellpose 3.0 |
Segmentation of nuclei and cells based on membrane or cytoplasmic signal |
| Sigma Plot |
Statistical analysis and plot of quantified data. |
| CellProfiler |
Identification and quantification of cell phenotypes |
Available softwares
* These software requires to connect to a license file.
Technical specifications
| PC | HP Z6 |
| Processor | Intel(R) Xeon(R) Gold 6134 3.2GHz - 8 cores |
| Display | interactive pen display monitor |
| RAM | 192 GB |
| Graphics card | NVIDIA GeForce GTX 1070 |
| Performance |
General Score : 7014 CPU Score : 16879 GPU Score : 14213 |
| Storage |
C drive : SAMSUNG NVMe 500GB (Read/Write : 3316/1932 MB/s) D drive : Intel NVMe 2TB (Read/Write : 1927/1944 MB/s) G drive : Kingston SSD 7TB (Read/Write : 565/531MB/s) |
Frits Zernike (1888-1966) invented phase contrast, allowing to see cells without staining them. He received a Nobel prize in 1953.