August Köhler

Location

CFIM image analysis room

QuPath (0.4.1) Visualization and analysis of tissue slides in brightfield or fluorescence
Zen Blue (3.7)* Visualization and analysis of images recorded on Zeiss Microscopes
Fiji Image processing package - Free
CellProfiler Identification and quantification of cell phenotypes
Stardist (Napari)
3D segmentation of nuclei integrated in Napari viewer
Cellpose 2.0 Segmentation of nuclei and cells based on membrane or cytoplasmic fluorescent

Available softwares

* These software requires to connect to a license file.

Technical specifications

PC HP Z420
Processor AMD Ryzen 9 5950X 16 Cores
Display Double screen
RAM 128 GB
Graphics card NVIDIA GeForce RTX 2080Ti
August Köhler (1866-1948) developed the microscope light path so as to have an even illumination of the sample (= Köhler illumination).