Ernst Ruska

Location

CFIM image analysis room

QuPath (latest) Visualization and analysis of tissue slides in brightfield or fluorescence. 
Zen Blue (3.9)* Visualization and analysis of images recorded on Cell Observer (Spinning Disc and TIRF), Axioscan, Widefield and SteREOLumar
Fiji Image processing package - Free
R
Software for statistical analysis
CellProfiler
Identification and quantification of cell phenotypes
Stardist (Napari) 3D segmentation of nuclei within Napari viewer.
Cellpose 3.0 Segmentation of nuclei and cells based on membrane or cytoplasmic signal.
Amira 2019.2 3D visualization and manipulation for EM and LM images
Imaris 10.2* 3D visualization and manipulation for LM images

Available softwares

* These software requires to connect to a license file.

Technical specifications

PC HP Z420
Processor AMD Ryzen 9 5950X 16 Cores
Display 32''
RAM 128 GB
Graphics card Nvidia GeForce RTX 3090
Performance

General Score : 13040

CPU Score : 46749

GPU Score : 26911

Storage

C drive : Western Digital NVMe 1TB (Read/Write : 6414/5101 MB/s)

D drive : Intel NVMe 2TB (Read/Write : 1824/1920 MB/s)

G drive : Kingston SSD 3.5TB (Read/Write : 522/502 MB/s)

Ernst Rushka (1906-1988) designed the first electron microscope. He was awarded a Nobel prize in 1986.