Ernst Ruska
Location
CFIM image analysis room
| QuPath (latest) | Visualization and analysis of tissue slides in brightfield or fluorescence. |
| Zen Blue (3.9)* | Visualization and analysis of images recorded on Cell Observer (Spinning Disc and TIRF), Axioscan, Widefield and SteREOLumar |
| Fiji | Image processing package - Free |
| R |
Software for statistical analysis |
| CellProfiler |
Identification and quantification of cell phenotypes |
| Stardist (Napari) | 3D segmentation of nuclei within Napari viewer. |
| Cellpose 3.0 | Segmentation of nuclei and cells based on membrane or cytoplasmic signal. |
| Amira 2019.2 | 3D visualization and manipulation for EM and LM images |
| Imaris 10.2* | 3D visualization and manipulation for LM images |
Available softwares
* These software requires to connect to a license file.
Technical specifications
| PC | HP Z420 |
| Processor | AMD Ryzen 9 5950X 16 Cores |
| Display | 32'' |
| RAM | 128 GB |
| Graphics card | Nvidia GeForce RTX 3090 |
| Performance |
General Score : 13040 CPU Score : 46749 GPU Score : 26911 |
| Storage |
C drive : Western Digital NVMe 1TB (Read/Write : 6414/5101 MB/s) D drive : Intel NVMe 2TB (Read/Write : 1824/1920 MB/s) G drive : Kingston SSD 3.5TB (Read/Write : 522/502 MB/s) |
Ernst Rushka (1906-1988) designed the first electron microscope. He was awarded a Nobel prize in 1986.