August Köhler
Location
CFIM image analysis room
| QuPath (latest) | Visualization and analysis of tissue slides in brightfield or fluorescence |
| Zen Blue (3.9)* | Visualization and analysis of images recorded on Zeiss Microscopes |
| Fiji | Image processing package - Free |
| CellProfiler | Identification and quantification of cell phenotypes |
| Stardist (Napari) |
3D segmentation of nuclei integrated in Napari viewer |
| Cellpose 3.0 | Segmentation of nuclei and cells based on membrane or cytoplasmic fluorescent |
| Imaris 10.2* | Visualization and analysis of large multidimensional fluorescent images |
| Amira 2019.2* | 3D visualization and manipulation for EM and LM images |
Available softwares
* These software requires to connect to a license file.
Technical specifications
| PC | HP Z420 |
| Processor | AMD Ryzen 9 5950X 16 Cores |
| Display | Double screen |
| RAM | 128 GB |
| Graphics card | NVIDIA GeForce RTX 4080 SUPER |
| Performance |
General Score : 13484 CPU Score : 45081 GPU Score : 35558 |
| Storage |
C drive : Western Digital NVMe 1TB (Read/Write : 6720/5038 MB/s) D drive : Intel NVMe 2TB (Read/Write : 1891/1918 MB/s) E drive : Kingston SSD 4TB (Read/Write : 545/499 MB/s) |
August Köhler (1866-1948) developed the microscope light path so as to have an even illumination of the sample (= Köhler illumination).