Santiago Ramón Y Cajal
Location
CFIM image analysis room
| QuPath (latest) | Visualization and analysis of brightfield and fluorescence tissue section |
| Zen Blue (3.9)* | Visualization and analysis of images recorded on Cell Observer (Spinning Disc and TIRF), Axioscan, Widefield and SteREOLumar |
| Amira (2019.2)* | 3D visualization and manipulation for EM and LM images |
| Fiji | Image processing package - Free |
| Cell Profiler | Automation of image quantification for biologists - Free |
| Huygens 23.10* | Software for deconvolution and stitching of large images |
| Arivis 4D* | Visualization and analysis of large multidimensional fluorescent images |
| Imaris 10.2* | Visualization and analysis of large multidimensional fluorescent images |
| Cellpose 3.0 & SAM | Segmentation of nuclei and cells based on membrane or cytoplasmic signal |
| Brainglobe (Napari) | Brain registration and cellfinder for large dataset |
| Stardist (Napari) | 3D segmentation of nuclei within Napari viewer. |
Available softwares
* These software requires to connect to a license file.
Technical specifications
| PC | ASUS |
| Processors | AMD Ryzen Threadripper 3990X 64 Cores |
| RAM | 256 GB |
| Graphics card | NVIDIA GeForce RTX 3090 |
| Performance |
General Score : 14735 CPU Score : 82697 GPU Score : 27017 |
| Storage |
C drive : Western Digital NVMe 1TB (Read/Write : 6911/5793MB/s) D drive : Samsung SSD 14TB RAID 0 (Read/Write : 576/512MB/s) F drive : Crucial NVMe 22TB RAID 0 (Read/Write : 25272/26077MB/s) |
Santiago Ramon Y Cajal