Image processing software packages

Free

• Fiji: Free image processing software based on Java
• ImageJ: Original ImageJ software before Fiji was released
• Icy: Open community platform for bioimage informatics
• Cell profiler Image analysis software: Creation of modular image analysis pipelines
• Imaris Viewer: Software for 3D rendering and visualization
• Zeiss Zen Blue: Free Lite version of Zeiss Zen softwares for Image processing
• IMOD: Tomographic Reconstruction
• Huygens Suite: Partial version
• Metamorph: Automation and Image Analysis

Demo Versions

• Amira: Visualization and manipulation of data (Free trial)
• Autoquant Deconvolution: Advanced Image Deconvolution and 3D Visualization Software (Free 30-Day Demo)
• Volocity: Demo 3D imaging software

Tools

• Biii: Community portal to help "choose the right knife" for BioImage processing & analysis